教員情報 - 優　乙石 | 前橋工科大学

ユウ　イッセキ YUU ISSEKI
優　乙石

所属前橋工科大学工学部生命情報学科

前橋工科大学大学院工学研究科生命情報学専攻（修士課程）

前橋工科大学大学院工学研究科環境・生命工学専攻（博士課程）

前橋工科大学工学部情報・生命工学群

職種准教授

著書・論文歴
2023/11	論文	SPANA: Spatial decomposition analysis for cellular-scale molecular dynamics simulations Journal of Computational Chemistry 45,498-505頁 (共著)
2021/10	論文	Reduced Efficacy of a Src Kinase Inhibitor inCrowded Protein Solution Nature Communications 12,4099 (共著)
2021/04	論文	A Generalized Entropy-Production Consistent with Perturbation Response in Biological Regulatory Systems 前橋工科大学研究紀要 (共著)
2021/01	著書	化学便覧基礎編改訂6版　17章3節　「熱力学量」 (共著)
2021/01	論文	細胞環境中の蛋白質間相互作用：大規模全原子分子動力学計算による理論的理論化学会誌「フロンティア」 (共著)
2018/06	論文	Challenges and opportunities in connecting simulations with experiments via molecular dynamics of cellular environments Journal of Physics Conference Series 1036 (012010) (共著)
2018/06	論文	High-Performance Data Analysis on the Big Trajectory Data of Cellular Scale All-atom Molecular Dynamics Simulations Journal of Physics Conference Series 1036 (012009) (共著)
2017	論文	Crowding in Cellular Environments at an Atomistic Level from Computer Simulations Journal of Physical Chemistry B 121,8009-8025頁 (共著)
2017	論文	Influence of Protein Crowder Size on Hydration Structure and Dynamics in Macromolecular Crowding Chemical Physics Letters 671,63-73頁 (共著)
2017	論文	Molecular Dynamics Simulations of Biomolecules in Cellular Environments Molecular Science 10 (共著)
2017	論文	Slow-Down in Diffusion in Crowded Protein Solutions Correlates with Transient Cluster Formation Journal of Physical Chemistry B 121,11072-11084頁 (共著)
2017	論文	バクテリア細胞質中の代謝物－蛋白質間相互作用：全原子細胞質モデルと大規模分子動力学計算による理論的研究アンサンブル 19,75-79頁 (共著)
2016	論文	Biomolecular interactions modulate macromolecular structure and dynamics in atomistic model of a bacterial cytoplasm eLife 5 (e19274) (共著)
2016	論文	Thermodynamics of macromolecular association in heterogeneous crowding environments: theoretical and simulation studies with a simplified model Journal of Physical Chemistry B 120,11856-11865頁 (共著)
2015	論文	Complete atomistic model of a bacterial cytoplasm for integratingphysics, biochemistry, and systems biology Journal of Molecular Graphics and Modellin 58,1-9頁 (共著)
2012	論文	Spatio-Temporal Characteristics of Transfer Free Energy of Apomyoglobin into the Crowding Condition with Trimethylamine N-oxide: A Study with Three Types of the Kirkwood-Buff Integral Journal of Physical Chemistry B 116,4080-4088頁 (共著)
2010	論文	Influence of Hydrostatic Pressure on Dynamics and Spatial Distribution of Protein Partial Molar Volume: Time-Resolved Surficial Kirkwood-Buff Approach Journal of Physical Chemistry B 114,12392-12397頁 (共著)
2009	論文	Carrier Method for the General Evaluation and Control of Pose, Molecular Conformation, Tracking, etc. Advances in Applied Clifford Algebras 19,339-364頁 (共著)
2009	論文	Energy Flow Analysis in Proteins via Ensemble Molecular Dynamics Simulations: Time-Resolved Vibrational Analysis and Surficial Kirkwood-Buff Theory Proteins: Energy, Heat and Signal Flow (共著)
2009	論文	Intrinsic Alterations in the Partial Molar Volume on the Protein Denaturation: Surficial Kirkwood−Buff Approach Journal of Physical Chemistry B 113,3543-3547頁 (共著)
2008	著書	すぐできる分子シミュレーションビギナーズマニュアル (共著)
2008	論文	Surficial Kirkwood-Buff Approach on the Preferential Interaction of Urea and Ectoine with Protein Proceedings of International Symposium on Frontiers of Computational Science,9-14頁 (共著)
2007	論文	Elongation of Water Residence Time at the Protein Interior in Aqueous Solution with Ectoine Frontiers of Computational Science,277-281頁 (共著)
2007	論文	Microscopic Understanding of Preferential Exclusion of Compatible Solute Ectoine: Direct Interaction and Hydration Alteration Journal of Physical Chemistry B 111,10231-10238頁 (共著)
2006	論文	Theoretical Study on Stabilities of N-terminal Partial Chains from Apo-Myoglobin Chemical Physics Letters 421,300-304頁 (共著)
2004	論文	Slowdown of Water Diffusion around Protein in Aqueous Solution with Ectoine Chemical Physics Letters 388,316-321頁 (共著)
2003	論文	Molecular Modeling of the Solvent Structuring of Chloroform around Cellulose Triacetate Bulletin of the Chemical Society of Japan 76,2285-2292頁 (共著)
2003	論文	Molecular Modeling of the Solvent Structuring of DMSO around Cellulose Triacetate Bulletin of the Chemical Society of Japan, 76,529-539頁 (共著)
2002	論文	Molecular Dynamics Study on the Density Fluctuation of Supercritical Water Journal of Computer Chemistry, Japan 1,83-88頁 (共著)