教員教育・研究情報 - 齋藤　大明

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齋藤　大明

所属北陸大学薬学部薬学科

職種准教授

著書・論文歴
論文	Synergistic effects of hydrophilic residues in the transmembrane region on lipid scrambling activity of dimeric helices Colloids and Surfaces B: Biointerfaces (251),114612 (共著) 2025/03/08
論文	Spectral and HPLC Analyses of Synthesized Butin and Butein Chem. Pharm. Bull. 72 (7),648-657頁 (共著) 2024/07/06
論文	Discovery of a cystathionine γ-lyase (CSE) selective inhibitor targeting active-site pyridoxal 5′-phosphate (PLP) via Schiff base formation Scientific Reports 13 (16456) (共著) 2023/09/30
論文	反転授業 / ピア・インストラクション / 協働学習を導入した物理化学講義の実践報告北陸大学紀要 (55),19-37頁 (共著) 2023/09
論文	Subtype-selective agonists of plant hormone co-receptor COI1-JAZs identified from the stereoisomers of coronatine COMMUNICATIONS BIOLOGY 6 (320),1-9頁 (共著) 2023/03/25
論文	Molecular dynamics study of lipid bilayer asymmetry induced by ion concentration gradient and electronic polarizability Molecular Simulation 48 (6),477-483頁 (共著) 2022/02/02
論文	Design, Synthesis, and Antifungal Activity of 16,17- Dihydroheronamide C and ent-Heronamide C The Journal of Organic Chemistry 86 (23),16249-16258頁 (共著) 2021/11/16
論文	Extended JAZ degron sequence for plant hormone binding in jasmonate co-receptor of tomato SlCOI1-SlJAZ Scientific Reports 11,13612 (共著) 2021/06/30
論文	学生の自習・復習を促す授業アーカイブシステム構築への取り組み北陸大学紀要 (51),1-15頁 (共著) 2021/03
論文	Structural Feature of Lipid Scrambling Model Transmembrane Peptides: Same-Side Positioning of Hydrophilic Residues and Their Deeper Position J. Phys. Chem. Lett. 11 (5),1662-1667頁 (共著) 2020
論文	Free energy profiles of lipid translocation across pure POPC and POPC/CHOL bilayer: all-atom molecular dynamics study IOP Conf. Series: Journal of Physics: Conf. Series (1290),012020 (共著) 2019/11
論文	Quantum chemical analysis of reaction indices and reaction path for drug molecules IOP Conf. Series: Journal of Physics: Conf. Series (1290),012021 (共著) 2019/11
論文	Oxygen reduction reaction of FeN4 center embedded in graphene and carbon nanotube: Density functional calculations AIP Advances 8,115113 (共著) 2018/11
論文	A rationally designed JAZ subtype-selective agonist of jasmonate perception NATURE COMMUNICATIONS 9 (3654),1-13頁 (共著) 2018
論文	Cholesterol blocks spontaneous insertion of membrane proteins into liposomes of phosphatidylcholine The Journal of Biochemistry 163 (4),313-319頁 (共著) 2018
論文	Effects of Hydrophilic Residues and Hydrophobic Length on Flip-Flop Promotion by Transmembrane Peptides J. Phys. Chem. B 122,4318-4324頁 (共著) 2018
論文	Molecular dynamics study of binary POPC bilayers: molecular condensing effects on membrane structure and dynamics IOP Conf. Series: Journal of Physics: Conf. Series (1136),012022 (共著) 2018
論文	A Novel Nuclear Receptor Ligand, Digoxigenin, is a Selective Antagonist of Liver-X-receptors CHEMISTRY LETTERS 46 (3),313-314頁 (共著) 2017/03
論文	A simple coarse-grained model for interacting protein complex MOLECULAR PHYSICS 115 (5),587-597頁 (共著) 2017
論文	Decomposition analysis of free energy profile for Hsp90-ADP association MOLECULAR SIMULATION 42 (11),896-901頁 (共著) 2016
論文	Dual function of coronatine as a bacterial virulence factor against plants: possible COI1–JAZ- independent role RSC Adv. 6 (23),19404-19412頁 (共著) 2016
論文	Tuning the work function of graphene with the adsorbed organic molecules: first-principles calculations MOLECULAR PHYSICS 114 (40),2993-2998頁 (共著) 2016
論文	A hybrid type approach with MD and DFT calculations for evaluation of redox potential of molecules”, Molecular simulation Molecular simulation 41,936-941頁 (共著) 2015
論文	Molecular Dynamics Study of Gramicidin A in Lipid Bilayer: Electrostatic Map and Ion Conduction JPS Conf. Proc.,012053 (共著) 2014
論文	Molecular Dynamics Study of Hsp90 and ADP: Hydrogen Bond Analysis for ADP Dissociation JPS Conf. Proc.,012056 (共著) 2014
論文	Network of water molecules around guanine nucleotide in the Hras-GTP and -GDP complexes by MD simulations JPS Conf. Proc.,016006 (共著) 2014
論文	Protein-protein interactions of Azurin complex in liquid system JPS Conf. Proc.,012054 (共著) 2014
論文	Π-stacking Interaction between Heterocyclic Rings in a Reaction Field of Biological System JPS Conf. Proc.,012055 (共著) 2014
論文	A molecular dynamics study of Hras-GTP and GDP complexes: the properties of water molecules around guanine nucleotide AIP Conf. Proc 1518,594-597頁 (共著) 2013
論文	Analysis of water molecules in the Hras-GTP and GDP complexes with molecular dynamics simulations Progress in Theoretical Chemistry and Physics 27,351-360頁 (共著) 2013
論文	Conformational Stability of Met20 Loop of DHFR:A molecular Dynamics Study AIPConf. Proc. 1518,654-657頁 (共著) 2013
論文	Evaluation of scoring functions for protein-ligand docking AIP Conf. Proc. 1518,645-648頁 (共著) 2013
論文	Molecular Dynamics Simulations of the Hras-GTP complex and the Hras-GDP complex Int. J. Quantum Chem. 113,2333-2337頁 (共著) 2013
論文	Molecular dynamics studies of Hsp90 with ADP: protein-ligand binding dynamics AIP Conf. Proc. 1518,637-640頁 (共著) 2013
論文	Molecular Dynamics Study of Electrostatic Potential along Lipid Bilayer with Gramicidin A AIP Conf. Proc. 1518,633-636頁 (共著) 2013
論文	Molecular Dynamics Study on Binding Free Energy of Azurin–Cytochrome c551 Complex Chem. Phys. Lett. 556,297-302頁 (共著) 2013
論文	Molecular Dynamics Study on Entrainment Phenomenon in Model Molecular Systems AIP Conf. Proc. 1518,729-732頁 (共著) 2013
論文	Molecular dynamics study on the free energy profile for dissociation of ADP from N-terminal domain of Hsp90 Chem. Phys. Lett. 588,226-230頁 (共著) 2013
論文	Theoretical Model for Assessing Properties of Local Structures in Metalloprotein AIP Conf. Proc. 1518,626-629頁 (共著) 2013
論文	Transition State Analysis of Azurin via Go-like Model AIP Conf. Proc. 1518,641-644頁 (共著) 2013
論文	Cell penetrating peptide induces various deformations of lipid bilayer membrane: inverted micelle, double bilayer and trans-membrane Int. J. Quantum Chem. 112,178-183頁 (共著) 2012
論文	Free energy of cell-penetrating peptide through lipid bilayer membrane: coarse-grained model simulation Progress in Theoretical Chemistry and Physics 26,503-511頁 (共著) 2012
論文	Molecular dynamics analyses of the dissociation process of ADP from Hsp90 Int. J. Quantum Chem. 112,3791-3795頁 (共著) 2012
論文	Molecular dynamics studies of lipid bilayer with gramicidin A: effects of gramicidin A on membrane structure and hydrophobic match Int. J. Quantum Chem. 112,161-170頁 (共著) 2012
論文	Molecular Dynamics Study of Glutathione S-transferase: Structure and Binding Character of Glutathione Progress in Theoretical Chemistry and Physics 26,545-553頁 (共著) 2012
論文	Molecular dynamics study of gramicidin a in lipid bilayer: Structure and lateral pressure profile Int. J. Quantum Chem. 112,3834-3839頁 (共著) 2012
論文	Solvation effect on the structural change of globular protein: a molecular dynamics study Int. J. Quantum Chem. 112,344-350頁 (共著) 2012
論文	The potentials of the atoms around Mg2+ in the H-ras GTP complex and in the H-ras GDP complex Progress in Theoretical Chemistry and Physics 26,525-543頁 (共著) 2012
論文	Cholesterol Effect on Water Permeability through DPPC and PSM Lipid Bilayers: A Molecular Dynamics Study JOURNAL OF PHYSICAL CHEMISTRY B 115 (51),15241-15250頁 (共著) 2011
論文	Domain motions of Klenow-like DNA polymerase I ITB-1 in the absence of substrate Int. J. Integ. Bio. 9,104 (共著) 2010
論文	Hydration property of globular proteins: An analysis of solvation free energy by energy representation method Chemical Physics Letters 497,218-222頁 (共著) 2010
論文	合成脂質膜の分子シミュレーション - フッ素化脂質分子シミュレーション研究会会誌アンサンブル 11 (4),22-25頁 (共著) 2009/04
論文	Fluorination Effects on Structure and Dynamics of Phospholipid Bilayer: A Molecular Dynamics Study Chem. Phys. Lett 468,260 (共著) 2009
論文	Molecular Dynamics Simulations of Ionic Liquids: Cation and Anion Dependence of SelfDiffusion Coefficients of Ions J. Phys. Chem. B 113,10641-10649頁 (共著) 2009
論文	Enhanced Hydrophobicity of fluorinated lipid bilayer: a molecular dynamics study J. Phys. Chem. B 112,11305 (共著) 2008
論文	Electronic structure of the active site with two configurations of azurin Int. J. Quantum Chem. 105,588-587頁 (共著) 2005
論文	Theoretical study on local backbone dynamics of Cupredoxin AIP conference proceedings 708,360-361頁 (共著) 2004
論文	Theoretical study on vibrational dynamics of Cupredoxin AIP conference proceedings 708,362-363頁 (共著) 2004
論文	A QM/MM molecular dynamics study of a dynamical change in effective charge on Be atom in (Be+nH(2))@C-60 Synthetic Metals 135,765-766頁 (共著) 2003
論文	Molecular collective dynamics in solid para-hydrogen and ortho-deuterium: The Parrinello-Rahman-type path integral centroid molecular dynamics approach J. Chem. Phys 119,953 (共著) 2003
論文	Structural phase transition and molecular collective dynamics in solid para-hydrogen: The Parrinello-Rahman-type path integral centroid molecular dynamics study Recent Res.Devel.Chem.Physics 4,93-124頁 (共著) 2003
論文	Theoretical study on intermolecular charge transfer by ab-initio molecular dynamics Synthetic Metals 121,1788-1789頁 (共著) 2003
論文	Estimation of transfer matrix of AgO system Molecular Crystals and Liquid Crystals 379,519-524頁 (共著) 2002
論文	Field-induced superconductivity Molecular Crystals and Liquid Crystals 379,495-500頁 (共著) 2002
論文	First-order Raman spectra and lattice dynamics of NdGaO3 crystal Phys. Rev. B 66,174302 (共著) 2002
論文	Laser control of proton motion in malonaldehyde molecule Journal of Molecular Structure 615,13-22頁 (共著) 2002
論文	Molecular dynamics simulation of metal oxides including Ag Molecular Crystals and Liquid Crystals 379,501-506頁 (共著) 2002
論文	Quantum bits with electric charges by Josephson junction Molecular Crystals and Liquid Crystals 379,561-566頁 (共著) 2002
論文	Theoretical study on selective transition toward the control of chemical reaction by laser field Recent Research Developments in Quantum Chemistry 3,211-244頁 (共著) 2002
論文	Quantum spin dynamics of antiferromagnetic ring with central excess spin Synthetic Metals 121,1788-1789頁 (共著) 2001
論文	Theoretical study on dependence of hyperpolarizability of one-dimensional ring system on the delocalization transition Int. J. Quantum Chem. 84,686-693頁 (共著) 2001
論文	Theoretical study on field-induced superconductivity in molecular crystal Int. J. Quantum Chem. 84,608-618頁 (共著) 2001
論文	Theoretical study on magnetic quantum tunneling of anisotropic spin systems with magnetic field Synthetic Metals 121,1784-1785頁 (共著) 2001
論文	Lattice dynamics and temperature dependence of the first-order Raman spectra for PbMoO4 crystal JOURNAL OF THE PHYSICAL SOCIETY OF JAPAN 69 (2),464-472頁 (共著) 2000
その他	有機化学者が計算化学者に助けてもらってリガンド-受容体間ドッキングシミュレーションによる分子設計に成功するまで分子シミュレーション学会誌"アンサンブル" 21 (3),196-203頁 (共著) 2019/07
その他	分子ドッキング法を用いたリガンド結合構造予測と分子認識分子シミュレーション研究会会誌アンサンブル 17 (2),77-82頁 (単著) 2015/04
その他	NAMDを用いたタンパク質の分子動力学法高分子 64,153-155頁 (単著) 2015/03